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R Glm Get Standard Error


Many thanks, Joshua Wiley-2 Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: Standard errors GLM Hi, See inline. Adjusted predictions are functions of the regression coefficients, so we can use the delta method to approximate their standard errors. IDRE Research Technology Group High Performance Computing Statistical Computing GIS and Visualization High Performance Computing GIS Statistical Computing Hoffman2 Cluster Mapshare Classes Hoffman2 Account Application Visualization Conferences Hoffman2 Usage Statistics 3D Finding a missing sequential number in a data file How to explain the use of high-tech bows instead of guns What's the temperature in TGVs? click site

The purpose of this page is to introduce estimation of standard errors using the delta method. This is the logistic regression function, designed this way so i can run more than one analysis at once: glmfunk <- function(x) glm( ldata$DFREE ~ x , family=binomial) I run it Err. of 2 variables: .. ..$ ldata$DFREE: int [1:40] 0 0 0 0 1 0 1 0 0 0 ... .. ..$ x : int [1:40] 39 33 33 32 24 30

How To Extract Residual Standard Error In R

Stata uses the Taylor series-based delta method, which is fairly easy to implement in R (see Example 2). When to use "ĉu" instead of "se"? Related 0Standard Error In Logistic Regression3Intercept from standardized coefficients in logistic regression3Confused about 0 intercept in logistic regression in R3Why are there huge differences in the SEs from binomial & linear other arguments Details se.coef extracts standard errors from objects returned by modeling functions.

For now I will stick with your second and easiest answer, but I will definitely return to the first part where you explain how to do more of the calculations "manually". Then we will get the ratio of these, the relative risk. On Tue, Mar 13, 2012 at 6:38 AM, D_Tomas <[hidden email]> wrote: > Dear userRs, > > when applied the summary function to a glm fit (e.g Poisson) the parameter > Regression Standard Error So I think we might can access this information directly. > > Thanks again, Well, you can get it with summary(x)$sigma, if class(x) == "lm" (Attention: it might be completely different

logit honors i.female math read, or Logistic regression Number of obs = 200 LR chi2(3) = 80.87 Prob > chi2 = 0.0000 Log likelihood = -75.209827 Pseudo R2 = 0.3496 ------------------------------------------------------------------------------ I feel like we should at least do something, but I may be missing something. –user2457873 Aug 10 '13 at 18:33 1 Old question, but this thread helped me just You should compare a joint confidence interval (first model) with a simple one (second model). vG <- t(grad) %*% vcov(m4) %*% (grad) sqrt(vG) ## [,1] ## [1,] 0.745 With a more complicated gradient to calculate, deltamethod can really save us some time.

To express them as odds ratios, we simply exponentiate the coefficients. Glm R Antsy permutations If the square root of two is irrational, why can it be created by dividing two numbers? Any systematic way of building different adjectives from numerals than just ordinals? In this model, we are predicting the probability of being enrolled in the honors program by reading score.

R Glm Coefficients

The relative risk is just the ratio of these proabilities. We can use the same procedure as before to calculate the delta method standard error. How To Extract Residual Standard Error In R asked 2 years ago viewed 1222 times active 2 years ago Blog Stack Overflow Podcast #92 - The Guerilla Guide to Interviewing Get the weekly newsletter! Logistic Regression Coefficient Standard Error The latter doesn't rely on knowing how the standard errors are derived.

codes: 0 `***' 0.001 `**' 0.01 `*' 0.05 `.' 0.1 ` ' 1 > > Residual standard error: 0.008649 on 4 degrees of freedom > Multiple R-Squared: 0.999, Adjusted R-squared: 0.9988 http://vealcine.com/standard-error/r-help-standard-error.php more hot questions question feed lang-r about us tour help blog chat data legal privacy policy work here advertising info mobile contact us feedback Technology Life / Arts Culture / Recreation Data Analysis Using Regression and Multilevel/Hierarchical Models. Error z value Pr(>|z|) ## (Intercept) -11.9727 1.7387 -6.89 5.7e-12 *** ## femalemale -1.1548 0.4341 -2.66 0.0078 ** ## math 0.1317 0.0325 4.06 5.0e-05 *** ## read 0.0752 0.0276 2.73 0.0064 Confidence Interval Logistic Regression

Related 16How to understand output from R's polr function (ordered logistic regression)?8How do I run Ordinal Logistic Regression analysis in R with both numerical / categorical values?5How to evaluate fit of Join them; it only takes a minute: Sign up Here's how it works: Anybody can ask a question Anybody can answer The best answers are voted up and rise to the Error) is normally distributed, if that answers your question? navigate to this website use "http://www.ats.ucla.edu/stat/data/hsbdemo", clear .

blog #r #regression Markdown source Please enable JavaScript to view the comments powered by Disqus. In this example we would like to get the standard error of a relative risk estimated from a logistic regression. Thanks for the code, it gives a practical way to get to my goal, and it proves that both sets of standard errors are correct.

Are the two sequences equal if the sums and sums of squares are equal?

p50 <- predict(m4, newdata=data.frame(read=50), type="response") p50 ## 1 ## 0.158 p40 <- predict(m4, newdata=data.frame(read=40), type="response") p40 ## 1 ## 0.0475 rel_risk <- p50/p40 rel_risk ## 1 ## 3.33 Students with reading Are there any historically significant examples? The models are numerically equivalent (this is what I wanted to highlight), but statistically different, they address different scientific questions. group <- rep(1:10, rep(10,10)) mu.a <- 0 sigma.a <- 2 mu.b <- 3 sigma.b <- 4 rho <- 0 Sigma.ab <- array (c(sigma.a^2, rho*sigma.a*sigma.b, rho*sigma.a*sigma.b, sigma.b^2), c(2,2)) sigma.y <- 1 ab

Browse other questions tagged regression logistic generalized-linear-model standard-error intercept or ask your own question. As before, we will calculate the delta method standard errors manually and then show how to use deltamethod to obtain the same standard errors much more easily. It returns an estimate for the contrast of two Poisson parameters which have support on the real line. http://vealcine.com/standard-error/r2-standard-error.php Why do units (from physics) behave like numbers?

First we set up the model and data. The delta method approximates the standard errors of transformations of random variable using a first-order Taylor approximation. summary() calculates much more than this value, thus it is much faster to calculate it *directly*, i.e. Although the delta method is often appropriate to use with large samples, this page is by no means an endorsement of the use of the delta method over other methods to

asked 3 years ago viewed 8520 times active 3 years ago Blog Stack Overflow Podcast #92 - The Guerilla Guide to Interviewing Get the weekly newsletter! Could someone please explain the reason for the differences in the magnitude of the standard errors between the two models? What is the standard error for that variable then? The deltamethod function expects at least 3 arguments.

Unfortunately, you died Asking when someone leaves work or home? Browse other questions tagged r syntax or ask your own question. The 'confint' function in MASS will return CI's based on the profile likelihood. > > Many thanks, > > > > -- > View this message in context: http://r.789695.n4.nabble.com/Standard-errors-GLM-tp4469086p4469086.html> What is the standard error for that variable then?