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R Error In Scan File


of 9 variables: $ NA. : Factor w/ 50 levels "Alabama","Alaska",..: 1 2 3 4 5 6 7 8 9 10 ... $ Population: num 3615 365 2212 2110 21198 ... Others contain the "#" symbol; read.table() interprets this as a comment character. AND THANK YOU FOR REPLYING SO QUICKLY!!!Sally----- Original Message -----From: "Henrik Bengtsson" To: "Sally" Cc: Sent: Monday, January 21, 2008 6:52 PMSubject: Re: [BioC] Error in scan(file, what, nmax, sep, dec, A previous solution was to transform .txt files to .csv in Excel, and afterwards open them with read.csv function. check my blog

I'm struggling to install Breakdancer. With data stored on ICPSR (see link above) or other archives another solution is to download the data in a new format. If flush=TRUE, scan() will flush (discard) to the end of line after reading reading the last of the fields requested. of4 variables: $ Name: chr"Eric" "Sean" "Ella" "Joseph" $ Age : num8 9 1 9 $ Gender: chr"M" "M" "F" " M" $ Height: int142 139 52 140> mydata<-read.table(file="sample.dat",sep=",",header=TRUE,colClasses=c("character","NULL","character","double"))> mydataName Gender

In Scan(file, What, Nmax, Sep, Dec, Quote, Skip, Nlines, Na.strings, : Eof Within Quoted String

If I have reached a maximum #, is there a fix?That option has nothing to do with gene expression data. See ?read.table for options. The value returned from scan() is, if what= is a list, a list whose length equals to length(what=) and the types and names of list elements agrees with those specified by what= argument; Fix this by setting the option quote = "\"" –Stuart Jan 31 '15 at 0:02 add a comment| up vote 1 down vote I encountered this issue while importing some of

  • See especially arguments 'strip.white', 'fill', and 'comment.char'.
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  • ADD REPLY • link written 2.9 years ago by zx8754 ♦ 3.3k 1 Yes, please do.
  • If this is the case, fill = TRUE is enough to solve your problem.

ADD REPLY • link written 2.9 years ago by Neilfws ♦ 46k 0 2.9 years ago by silkeverhelle • 10 silkeverhelle • 10 wrote: I found a solution. read.table("test.txt", header = TRUE, fill = TRUE) # V1 V2 # First 1 2 # Second 2 NA # Third 3 8 R is also smart enough to figure it out What kind of bugs do "goto" statements lead to? R Fill = True of4 variables: $ Name: Factor w/ 4 levels "Ella","Eric",..: 2 4 1 3 $ Age : int8 9 1 9 $ Gender: chr"M" "M" "F" " M" 2.6  Other comments about

as.data.frame -- a logical value indicating if the result should be coerced into a data.frame. Success! Therefore, it is a good and safe practice to specify col.names= argument. 2.3  Row names The row.names= argument can be passed in one of three ways: a vector giving the actural Most functions work fine, so I guess my ...

R 1 odbcConnectExcel(xls.file, readOnly = TRUE, ...) In this session, the Excel spreadsheet file, rodbc_sample.xls, is used for illustration: To use the RODBC interface for Excel, a connection object needs to be created Scan Expected A Real Got What's a Damn Dorothy Word™? Does the local network need to be hacked first for IoT devices to be accesible? How to flood the entire lunar surfaces?

Error In Read.table Duplicate 'row.names' Are Not Allowed

Hello, Genome MuSic path-scan crashes with the following error on one of my datasets, and works ... Also, try to read data Henrik Bengtsson at Jan 22, 2008 at 2:52 am ⇧ On Jan 21, 2008 5:24 PM, Sally wrote:I am using limma and am trying to set In Scan(file, What, Nmax, Sep, Dec, Quote, Skip, Nlines, Na.strings, : Eof Within Quoted String if you have a "feature" with a space in the name it will not work. Error In Read.table More Columns Than Column Names If what= argument is a list containing (examples of) data types, scan() will output a list with the number of its elements equal to length(what), and the types of the list

Print some JSON When a girl mentions her girlfriend, does she mean it like lesbian girlfriend? click site of6 variables: $ Date: Date, format: "2009-01-01" "2009-02-01" "2009-03-01" "2009-04-01" ... $ Month : Factor w/ 12 levels "Apr","Aug","Dec",..: 5 4 8 1 9 7 6 2 12 11 ... $ First thing to try would be adding ..., comment.char=TRUE to your argument list. –42- Nov 26 '13 at 20:31 1 open a bash terminal and have a look at line The colClass= argument is a vector of classes to be assumed for the columns. In Scan(file = File, What = What, Sep = Sep, Quote = Quote, Dec = Dec, : Eof Within Quoted String

Ltd., Bangalore-560001. Is it safe for a CR2032 coin cell to be in an oven? I used readLines(textConnection(examdata)) to determine where the actual data table began. http://vealcine.com/error-in/r-error-in-scan.php Note that it is ok for more than one records are from same line of the file.

Ideally, you would find a way to read it "as is". R Read Table Fill asked 2 years ago viewed 4629 times active 1 month ago Blog Stack Overflow Podcast #92 - The Guerilla Guide to Interviewing Visit Chat Related 19Confusing error in R: Error in The file, lproks_0.txt (direct link), looked like a regular tab-delimited file with a couple of header lines: head lproks_0.txt ## Microbial Organism Information Page ## Columns: "RefSeq project ID" "Project ID"

R > library(RODBC) > ExcelFile<-"c:\\Users\\Derek_Jing\\Desktop\\quantlego\\rodbc_sample.xls" > con<-odbcConnectExcel(ExcelFile,readOnly=TRUE) 123 > library(RODBC)> ExcelFile<-"c:\\Users\\Derek_Jing\\Desktop\\quantlego\\rodbc_sample.xls"> con<-odbcConnectExcel(ExcelFile,readOnly=TRUE) The ODBC interface treats the various sheets in a spreadsheet file as database table.

Numbers at the corners of concentric squares Can you move a levitating target 120 feet in a single action? Fields that are of zero-width or are wholly beyond the end of line in file are replaced by NA. - Negative-width fields are used to indicate columns to be skipped, e.g., In other words, The fields of one record cannot span over different lines. Read Table Fill True The default recognizes any white space, e.g.

For this tab-delimited data, this meant only that some verbatim excerpts of comments from subjects were no longer in quotes which was a non-issue for my data analysis. This post is not an answer. Note that under Windows, double back-slash ‘\\' shall be used in path name. 2.2  Column (variable) names If the first line in your input data consists of variable names separated by the http://vealcine.com/error-in/r-read-table-error-in-scan.php If you are not the intended recipient, please notify us immediately; you should Dr.

R ===== Data file: sample.dat ===== Name,Age,Gender,Height Eric,8,M,142 Sean,9,M,139 Ella, 1,F,52 Joseph, 9, M, 140 -------------------- > mydata<-read.table(file="sample.dat",sep=",",header=TRUE) > mydata Name Age Gender Height 1 Eric 8 M 142 2 Sean Compare consecutive columns of a file and return the number of non-matching elements P.S: I need to use Python for this.  I have a text file which looks like this: # But dat <- read.delim(file = "c:\\temp2\\lproks_0.txt", sep = "\t", skip = 1) works like a charm… Greets, Andrej nsaunders Post authorApril 8, 2011 at 16:07 That solution reads the file without Another example: R > ff<-tempfile() > ff [1] "C:\\Users\\DEREK_~1\\AppData\\Local\\Temp\\RtmpOwuoVj\\file276c15ab25d8" > cat(file=ff,"123456","987654",sep="\n") > read.fwf(ff,widths=c(1,2,3)) V1 V2 V3 1 1 23 456 2 9 87 654 > read.fwf(ff,widths=c(1,-2,3)) V1 V2 1 1 456

of4 variables: $ Name: Factor w/ 4 levels "Ella","Eric",..: 2 4 1 3 $ Age : int8 9 1 9 $ Gender: Factor w/ 3 levels " M","F","M": 3 3 2 There might be empty spaces/tabsetc at the end of that line. more hot questions lang-r about us tour help blog chat data legal privacy policy work here advertising info mobile contact us feedback Technology Life / Arts Culture / Recreation Science Other To go ahead, you can use the fill=TRUE argument to fill in lines of fewer variables using blanks or NAs.