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R Error In Scan File What Nmax

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asked 2 years ago viewed 290 times active 2 years ago Blog Stack Overflow Podcast #92 - The Guerilla Guide to Interviewing Related 77Trimming a huge (3.5 GB) csv file to share|improve this answer answered Jun 14 '14 at 15:41 Greg Kennedy 8112 7 You could have also set read.table(..., comment.char = "") to turn off the interpretation of comments in I suspect I'm doing something very basic which is wrong! Browse other questions tagged r or ask your own question. check my blog

Fix this by setting the option quote = "\"" –Stuart Jan 31 '15 at 0:02 add a comment| up vote 1 down vote I encountered this issue while importing some of It's important to the answer to the question –Rich Scriven Oct 25 '14 at 23:32 add a comment| 2 Answers 2 active oldest votes up vote 7 down vote Looks like Which lane to enter on this roundabout? (UK) Scroll a quarter (25%) of the screen up or down Numbers at the corners of concentric squares Get 2 lines yanked or 1 Building Bowtie index failure Greetings: I am using Tophat2 (command line) to analyze RNA-seq data and I am encountering some e...

In Scan(file, What, Nmax, Sep, Dec, Quote, Skip, Nlines, Na.strings, : Eof Within Quoted String

Use read.delim or at least sep="\t". Sanjay Bhatikar (1) Henrik Bengtsson (1) Content Home Groups & Organizations People Users Badges Support Welcome FAQ Contact Us Translate site design / logo © 2016 Grokbase Log In Error how Magento validate XSD schema? How to make sure that my operating system is not affected by CVE-2016-5195?

  1. The default recognizes anywhite space, e.g.
  2. Most functions work fine, so I guess my ...
  3. See ?read.table for options.
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Does the code terminate? If the square root of two is irrational, why can it be created by dividing two numbers? When I use the following script to read in a table of expression data (17,329 rows x 29 columns, tab delimited):exprdata<-read.table("exprsData.txt", header=TRUE)I get the following error message:Error in scan(file, what, nmax, R Fill = True You can try using the argument "fill=TRUE" in your command like this -> train <- read.table("train_loan.csv", fill=TRUE) If you still face a problem refer to this link stackoverflow.com Confusing error in

The workaround I have found is to paste the data straight from Excel into a .txt document, then open with: read.table(file.choose(), sep="\t"). I used sep= "\t" to solve the problem. share|improve this answer answered Jan 9 at 19:09 user2859829 255 add a comment| up vote -1 down vote One of my variables was categorical with one alternative being multi string ("no Read the help page for read.table() for ways to deal with this.

How to make twisted strips Why would breathing pure oxygen be a bad idea? Error In Scan File What Nmax Sep Dec Quote Skip Nlines Na Strings Scan Expected A Real See ?read.table for options. It is only a shorthand to the latter. –Ricardo Cruz Dec 4 '15 at 13:22 add a comment| Your Answer draft saved draft discarded Sign up or log in Sign Browse other questions tagged r or ask your own question.

Error In Read.table Duplicate 'row.names' Are Not Allowed

more stack exchange communities company blog Stack Exchange Inbox Reputation and Badges sign up log in tour help Tour Start here for a quick overview of the site Help Center Detailed Join them; it only takes a minute: Sign up Confusing error in R: Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have 42 In Scan(file, What, Nmax, Sep, Dec, Quote, Skip, Nlines, Na.strings, : Eof Within Quoted String The simple way to solve this would be to delete the header label of the 1st column. Error In Read.table More Columns Than Column Names Once I removed the "#" from the offending cells, the data imported without issue.

ADD REPLY • link modified 2.9 years ago • written 2.9 years ago by Michael Dondrup ♦ 39k 2 This error means what it says; the text file is not (tab) click site Any help would be appreciated. if you have a "feature" with a space in the name itwill not work.I get the following error message:Error in scan(file, what, nmax, sep, dec, quote, skip, nlines,na.strings, :line 304 did reply | permalink Related Discussions [BioC] GEOquery error importing GEO data with 'null' values [BioC] problems with marray and gpr files [BioC] Error with arrayQuality [BioC] loading gal file using read.Galfile() In Scan(file = File, What = What, Sep = Sep, Quote = Quote, Dec = Dec, : Eof Within Quoted String

more hot questions lang-r about us tour help blog chat data legal privacy policy work here advertising info mobile contact us feedback Technology Life / Arts Culture / Recreation Science Other Get 2 lines yanked or 1 line yanked confirmation Cooking inside a hotel room Why do neural network researchers care about epochs? Start Watching « Prev Topic » Next Topic 0 votes Hi I am an absolute beginner to both sentiment analysis and R. http://vealcine.com/error-in/r-error-in-scan.php All 29 columns have data.Typically the error messages are useful, so treat it as if thereindeed is a problem on that line.

This seems to clean up whatever formatting issue makes R unhappy. R Read Table Fill Seeespecially arguments 'strip.white', 'fill', and 'comment.char'.Also, try to read data from the first 303 rows using argumentnrow03. You can do that easily with the command like that: awk -F '\t' '{print $1","$2",\""$3"\","$4}' train.tsv > train.csv That works on mac or linux, on widows you may need cygwin installed.

r dataset statistics share|improve this question edited Aug 10 '13 at 10:49 A Handcart And Mohair 118k14161246 asked Aug 10 '13 at 10:30 REnthusiast 3762513 add a comment| 5 Answers 5

use argument sep="\t". In multimember constituencies of the House of Commons, how many votes did each voter have? r share|improve this question asked Oct 18 '13 at 16:55 bernie2436 3,9551866145 marked as duplicate by Frank, rcs, liyakat, Jilber, Dour High Arch Oct 19 '13 at 16:28 This question has Read Table Fill True Americanism "to care SOME about something" Misuse of parentheses for multiplication Which lane to enter on this roundabout? (UK) Would it be ok to eat rice using spoon in front of

There might be empty spaces/tabsetc at the end of that line. Also note read.csv() is the same as read.table(sep=',', header=TRUE). When I use the following script to read in a table of expression data (17,329 rows x 29 columns, tab delimited):exprdata<-read.table("exprsData.txt", header=TRUE)If it is a tab-delimited file, it is safer it http://vealcine.com/error-in/r-read-table-error-in-scan.php Join them; it only takes a minute: Sign up Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings, : line 1 did not have 2 elements up vote 0

Why do units (from physics) behave like numbers?